Been searching for something like this for months. Our Shopify store processes 500+ orders monthly and this handles everything perfectly. Date formats, tax columns, refunds - all correct.
Reconcile Square in QuickBooks Online — Complete Fee Matching
Reconcile your Square account in QuickBooks Online. Match Net amounts to bank, track fees as expenses, and close your books accurately.
How It Works
Export from Square
Square Dashboard → Transactions → Export as CSV
Convert to Journal Entries
Upload here, configure your QuickBooks account names
Import to QuickBooks
Settings → Import Data → Journal Entries → Upload converted file
Reconcile in QuickBooks
Go to Banking → Reconcile. Net amounts match Square deposits.
Why Square Reconciliation Is Challenging
The Deposit Doesn't Match Problem
How This Tool Helps
Your Data is Safe
Bank-Level Security
256-bit SSL encryption. Same standards as major financial institutions.
No Data Storage
Files are processed directly in browser. No calls to our servers.
GDPR Compliant
Full EU data protection compliance. Your privacy rights protected.
Field Mapping
How Square Transactions fields map to Quickbooks Online Journal Entry
| Square Transactions | Source Value | Quickbooks Online Journal Entry | Target Value | Note | |
|---|---|---|---|---|---|
Date |
2026-01-15 |
→ | JournalDate |
2026-01-15
|
Transaction date to MM/DD/YYYY |
Gross Sales |
100.00 |
→ | Credits |
100.00
|
Gross sales credited to revenue |
Fees |
-2.90 |
→ | Debits |
-2.90
|
Processing fees debited to expense (ABS of negative) |
Net Total |
99.30 |
→ | Debits |
99.30
|
Net amount deposited to bank |
Deposit ID |
DEP789012 |
→ | Memo |
DEP789012
|
Payout reference in memo |
Why Use This Tool?
Complete Fee Tracking
Every Square processing fee recorded as a separate expense.
Tips Tracking
Tips recorded as liability, separate from sales revenue.
Bank Reconciliation Ready
Net amounts match Square deposits exactly.
Multi-Location Support
Transactions include location for departmental reporting.
Deposit Matching
Transactions grouped by Transfer ID for easy bank matching.
Refund Handling
Refunds reduce revenue with correct accounting entries.
Data Transformation
Square transactions grouped by Deposit ID become balanced journal entries
One row per transaction, grouped by Deposit ID
Date,
Gross Sales,
Fees,
Net Total,
Deposit ID
Double-entry accounting with balanced debits and credits
Common Journal Entry Import Errors
Issues you might encounter when importing Transactions Export data to Journal Entry - and how we solve them
Unbalanced Journal Entry
QuickBooks requires Debits = Credits for each journal entry
Debit: $970, Credit: $1000 (unbalanced)
Debit: $970 + $30, Credit: $1000 (balanced)
We auto-calculate balanced entries: Bank + Fees = Sales
Each deposit creates a balanced entry with fee breakdown
Square Uses Negative Fees
Square exports fees as negative values (e.g., -$3.22)
Fees: -$3.22
Fees Expense (Debit): $3.22
Fee values are converted to positive for expense tracking
Negative fees are automatically converted using ABS()
Account Names Not Found
Import fails if account names don't match your Chart of Accounts
Account: 'Square Sales' (not in your QB)
Account: 'Sales Income' (matches your QB)
Configure your actual account names before converting
Use account settings to match your QB Chart of Accounts
Frequently Asked Questions
Square → Quickbooks Online Data Ecosystem
All available data flows from Square to Quickbooks Online
First Name + Last Name → Name
Company Name → Company
Email Address → Email
Item Name + Variation → Product/Service Name
SKU → SKU
Description → Sales Description
Date → JournalDate
Gross Sales → Credits
Fees → Debits
Transaction ID → RefNumber
Date → TxnDate
Total Collected → ItemAmount